Bioinformatics:

14 Jun 2013, Friday

*H. Sh. Weinberg; A. B. Korol; V. M. Kirzhner; A. Avivi; T. Fahima; Eviatar Nevo; S.

Shapiro; G. Rennert; O.Piatak;  E. I. Stepanova; E. Skvarskaja. (2001). Very

high   mutation rate in offspring of Chernobyl accident liquidators,

Philosophical Transaction   Royal Society B., 268,1471,1001 – 1005.

*E.N.Trifonov, A. Kirzhner, V. Kirzhner, I.N. Berezovsky (2001) Distinct Stages of

      Protein Evolution as Suggested by Protein Sequence AnalysisJ.Mol. Evol., 53, 4-5,   394-401.

*Valery M. Kirzhner, Abraham B. Korol, Alexander Bolshoy and Eviatar Nevo (2002)

Compositional   spectrum – revealing patterns for genomic sequence

characterization   and  comparison, Physica A, 312, 447- 457.

*V.M. Kirzhner, E. Nevo, A.B. Korol and A. Bolshoy. (2003). One promising approach to a large scale comparison of genomic sequences, Acta Biotheoretica, 51, 2, 73-89.

*Berezovsky IN, Kirzhner A, Kirzhner VM, Rosenfeld VR, Trifonov EN.(2003)

Protein sequences yield a proteomic code, J Biomol Struct Dyn. 21, 3, 317-26.

*Berezovsky IN, Kirzhner A, Kirzhner VM, Trifonov EN.(2003). Spelling protein

      Structure, J Biomol Struct Dyn., 21, 3, 327-40.

*Peleg O, Kirzhner V, Trifonov E, Bolshoy A. (2004).Overlapping messages and survivability, J Mol Evol. 59 (4):520-7.

*Valery Kirzhner, Alexander Bolshoy, Zeev Volkovich, Abraham Korol, Eviatar Nevo. (2005). Large scale genome clustering across life based on a linguistic approach. BioSystem 81,3, 208-222.

*Z. Volkovich, V. Kirzhner, A. Bolshoy, A. Korol and E. Nevo. (2005). The Method of N-grams in Large-Scale Clustering of DNA texts, Pattern Recognition 38, 11, 1902-1912.

*A. Paz, V. Kirzhner, E. Nevo, and A. Korol (2006). Coevolution of DNA-Interacting Proteins and Genome “Dialect”, Molecular Biology and Evolution 23(1):56-64.

*Valery Kirzhner, A. Paz, Z. Volkovich, E. Nevo and A. Korol (2007). Different

       Clustering of Genomes Across Life Using the A-T-C-G and Degenerate R-Y

       Alphabets: Early and Late Signaling on Genome Evolution? Journal of Molecular  Evolution 64, 4:448-456.

*Z. Volkovich, V. Kirzhner, Z. Barzily, S. Hosid and K. Korenblat,(2010). A Linguistic Approach to Classification of Bacterial Genomes, Pattern Recognition 43,3: 1083-1093.

*V. Kirzhner, S. Frenkel and A. Korol (2011). Minimal-Dot Plot: “Old Tale in New Skin” about Sequence Comparison, Information Sciences, 181, 1454-14-62.

V.Kirzhner, S. Frenkel and A. Korol,(2011) Non-alignment comparison of human and high primate genomes, arXiv:1111.6172v1 [q-bio.GN]

*V.Kirzhner, S. Frenkel and A. Korol,(2012) Organizational Heterogeneity of Vertebrate Genomes, PLoS ONE 7(2):1-15.

V.Kirzhner, Z. Volkovich (2012) Evaluation of the Genome Mixture Contents by Means of the Compositional Spectra Method, arXiv:1203.2178v1 [q-bio.GN].

*V. Kirzhner, Z. Volkovich (2012) Model of Overlapping Messages with Degenerate Coding, Applied Mathematics 3: 188-197.

 

Book

Alexander Bolshoy, Zeev Volkovich, Valery Kirzhner, Zeev Barzily. Genome Clustering: From Linguistic Models to Classification of Genetic Texts (Studies in Computational Intelligence), Springer, 2010.